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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7190548_7192202_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7190548 - 7192202
Intron Length:
1655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGACTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTAAAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTCTTCTAAAAT
Flanking Amino Acid:
SIFKSLHQIEIHHCGGKLIK
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
68.1
42.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
66.7
0.38
1
63.7
35.9
Minor 5ss
41.7
-0.9
3.1
56
48.1
Minor BPS
62.7
0.48
1.8
80.39
41.7

Associated Gene:

Gene:
NISCH
Ensembl Gene ID:
ENSAPLG00000007897
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008274
7187649 - 7207177
19529