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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7192299_7192863_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7192299 - 7192863
Intron Length:
565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
TCATCTTAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAA
U12 Branch Point Sequence:
TCATCTTAAACA
Flanking Amino Acid:
SVRFSATSMKEILVPEASEF
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.8
38.5
Major BPS
73.4
0.58
0.9
63.7
35.1
Major PPT
69.7
0.44
1
66.1
38.5
Minor 5ss
43
-0.8
2.9
56.9
47.4
Minor BPS
64.7
0.46
1.7
71.6
40.9

Associated Gene:

Gene:
NISCH
Ensembl Gene ID:
ENSAPLG00000007897
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008274
7187649 - 7207177
19529