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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7193017_7193842_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7193017 - 7193842
Intron Length:
826

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATCTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CATTTTTTATCT
Flanking Amino Acid:
NNISQIDDSVKLIPKIEFLD
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.1
0.81
0.7
81.8
29.8
Minor 5ss
35.3
-1.7
3.1
46.4
43
Minor BPS
62.5
0.47
1.6
76.08
41.1

Associated Gene:

Gene:
NISCH
Ensembl Gene ID:
ENSAPLG00000007897
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008274
7187649 - 7207177
19529