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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7196298_7198976_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7196298 - 7198976
Intron Length:
2679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCATG
5'SS Class:
strong_major
3'SS Sequence:
CTATTTGTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAG
U12 Branch Point Sequence:
GTAGTTTTAAGA
Flanking Amino Acid:
SLPRPVSSSQEIIREETVLA
Intron Amino Acid Position:
409

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
74.6
41.7
Major BPS
75.6
0.64
1.5
84
34.5
Major PPT
76.6
0.6
0.9
69.4
41.5
Minor 5ss
43.1
-0.8
2.9
57.5
46.8
Minor BPS
50.7
0.02
1.7
59.83
40.5

Associated Gene:

Gene:
NISCH
Ensembl Gene ID:
ENSAPLG00000007897
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008274
7187649 - 7207177
19529