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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7200043_7200530_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7200043 - 7200530
Intron Length:
488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCTAG
5'SS Class:
strong_major
3'SS Sequence:
GTCTCTTTTGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
TTGTACTTACTG
Flanking Amino Acid:
SEEYGRGGRTCLDHSEQEHC
Intron Amino Acid Position:
468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
67.6
40.2
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
73.8
0.53
1
74.7
33.9
Minor 5ss
43.3
-0.7
2.9
52.3
45.8
Minor BPS
55.6
0.04
1.9
63.96
44.3

Associated Gene:

Gene:
NISCH
Ensembl Gene ID:
ENSAPLG00000007897
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008274
7187649 - 7207177
19529