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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7205498_7206548_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7205498 - 7206548
Intron Length:
1051

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTAATTGGAAGT
Flanking Amino Acid:
FYSEFGSKNTGKMENYELIH
Intron Amino Acid Position:
1114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
77.9
36.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
86.1
0.81
0.8
80.6
31.4
Minor 5ss
34.5
-1.8
3.3
46.4
44.2
Minor BPS
41.5
-0.5
2.2
61.54
42.5

Associated Gene:

Gene:
NISCH
Ensembl Gene ID:
ENSAPLG00000007897
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008274
7187649 - 7207177
19529