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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7226499_7228073_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7226499 - 7228073
Intron Length:
1575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGCCAC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTGTATCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTGTGTTTATTA
Flanking Amino Acid:
TCEINSNGNPSCVCKEGEIA
Intron Amino Acid Position:
315

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
68.4
38.7
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
73.5
0.53
1
66.6
44.3
Minor 5ss
32.7
-2
3
41
45.6
Minor BPS
51
0.03
2
66.28
41.4

Associated Gene:

Gene:
STAB1
Ensembl Gene ID:
ENSAPLG00000006699
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007093
7220142 - 7270852
50711