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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7230144_7235697_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
7230144 - 7235697
Intron Length:
5554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAACTGA
5'SS Class:
weak_major
3'SS Sequence:
ATTGTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
AAATCTTTTATT
Flanking Amino Acid:
LTFNNQVNDINCGLPAILDG
Intron Amino Acid Position:
441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.2
0.12
1.1
50
37
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
86.4
0.82
0.8
81.1
35.9
Minor 5ss
39.7
-1.2
3.1
51.7
46.5
Minor BPS
59.6
0.38
1.6
72.19
39

Associated Gene:

Gene:
STAB1
Ensembl Gene ID:
ENSAPLG00000006699
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007093
7220142 - 7270852
50711