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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_72354_74386_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
72354 - 74386
Intron Length:
2033

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTTA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
TTTTCTTTTCCC
Flanking Amino Acid:
QAESKKDYEEWICTINNISK
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.8
84.1
30.2
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
89
0.88
0.6
87.5
22.8
Minor 5ss
47.4
-0.3
2.8
64.4
47
Minor BPS
46.8
-0.2
3.6
78.32
37.8

Associated Gene:

Gene:
APPL1
Ensembl Gene ID:
ENSAPLG00000004500
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004671
64512 - 85564
21053