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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7235837_7237646_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
7235837 - 7237646
Intron Length:
1810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCCTGAGA
5'SS Class:
weak_major
3'SS Sequence:
CAGGTGACTGTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
ATATGTTTATTT
Flanking Amino Acid:
TEVRAHNTLREKLIMMPHIV
Intron Amino Acid Position:
487

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.1
0.12
1.4
53.6
45
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
56.2
0.14
1
48
40.1
Minor 5ss
26
-2.8
3
32.5
41.6
Minor BPS
50.1
0.08
2
70.65
41

Associated Gene:

Gene:
STAB1
Ensembl Gene ID:
ENSAPLG00000006699
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007093
7220142 - 7270852
50711