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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7239117_7240409_F

Intron Information:

Intron Rank:
14
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
7239117 - 7240409
Intron Length:
1293

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CTG|GCAGCAGAG
5'SS Class:
weak_major
3'SS Sequence:
CTACAGGAATCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATGTAAC
U12 Branch Point Sequence:
TCTACAGGAATC
Flanking Amino Acid:
EALNSSVCPPALFPKECVYI
Intron Amino Acid Position:
580

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.9
0.23
1.3
49
44.4
Major BPS
65.7
0.39
1.2
67.4
36.7
Major PPT
51.2
0.03
1.1
47.8
43.6
Minor 5ss
23.7
-3
4.3
33.8
44.3
Minor BPS
42.9
-0.5
2.2
57.08
41.6

Associated Gene:

Gene:
STAB1
Ensembl Gene ID:
ENSAPLG00000006699
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007093
7220142 - 7270852
50711