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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7240505_7241538_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7240505 - 7241538
Intron Length:
1034

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GGTAATTTAATG
Flanking Amino Acid:
CARYCNQTVMKPGCCKGFFG
Intron Amino Acid Position:
612

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
67.6
37.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
87
0.83
0.7
84.6
30.3
Minor 5ss
27.7
-2.6
3
29.4
36.9
Minor BPS
51.4
-0.1
1.6
54.78
40.3

Associated Gene:

Gene:
STAB1
Ensembl Gene ID:
ENSAPLG00000006699
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007093
7220142 - 7270852
50711