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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7245090_7245980_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7245090 - 7245980
Intron Length:
891

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGGCT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
AGCTCTTTAAAA
Flanking Amino Acid:
ADCIYIGPGQSKCVCKRGYA
Intron Amino Acid Position:
824

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
72.2
37.3
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
85.6
0.8
0.7
80.7
24.6
Minor 5ss
37.9
-1.4
3.6
56.2
48.2
Minor BPS
65.5
0.48
1.4
67.73
38.5

Associated Gene:

Gene:
STAB1
Ensembl Gene ID:
ENSAPLG00000006699
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007093
7220142 - 7270852
50711