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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7246563_7247176_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7246563 - 7247176
Intron Length:
614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTATTTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTGTTTCTATTT
Flanking Amino Acid:
GMTCYGDVLKELAGSSHFAG
Intron Amino Acid Position:
888

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.5
26.8
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
77.3
0.61
1
78.8
33.1
Minor 5ss
28.3
-2.5
3.1
31.2
36.7
Minor BPS
49.2
0.02
1.9
71.43
40.6

Associated Gene:

Gene:
STAB1
Ensembl Gene ID:
ENSAPLG00000006699
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007093
7220142 - 7270852
50711