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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7247219_7248112_F

Intron Information:

Intron Rank:
23
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
7247219 - 7248112
Intron Length:
894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTTAAGGTA
5'SS Class:
weak_major
3'SS Sequence:
CTTTGGACAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
ATTTGTTCATCT
Flanking Amino Acid:
SSHFAGFYDWKSLFSIPAGT
Intron Amino Acid Position:
902

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.7
0.23
1.2
58.5
40.5
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
65.6
0.35
1
59.2
40.7
Minor 5ss
28.1
-2.5
3.5
30.4
43.1
Minor BPS
48.6
-0
2.2
74.31
42.8

Associated Gene:

Gene:
STAB1
Ensembl Gene ID:
ENSAPLG00000006699
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007093
7220142 - 7270852
50711