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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7250707_7250858_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7250707 - 7250858
Intron Length:
152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATCAT
U12 Branch Point Sequence:
AGGTCATCATCT
Flanking Amino Acid:
WLMFYQNSTQKFVNDIPLDG
Intron Amino Acid Position:
1077

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.6
1
0.8
84.6
33.3
Major BPS
75.6
0.64
1.1
76.2
37.5
Major PPT
89
0.88
0.6
84.2
23.6
Minor 5ss
37.1
-1.5
3
48.5
47.2
Minor BPS
46.6
-0.1
2
65.09
44.7

Associated Gene:

Gene:
STAB1
Ensembl Gene ID:
ENSAPLG00000006699
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007093
7220142 - 7270852
50711