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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7254009_7254393_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7254009 - 7254393
Intron Length:
385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACAGCG
5'SS Class:
major
3'SS Sequence:
TCTTCCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TGAGCATTTATT
Flanking Amino Acid:
VGRYGADCKSECACDNGICN
Intron Amino Acid Position:
1201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
59.5
39.8
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
83.6
0.76
0.7
77.7
24.2
Minor 5ss
30.8
-2.2
3.3
39.2
46.2
Minor BPS
47.8
-0
2
66.69
43.7

Associated Gene:

Gene:
STAB1
Ensembl Gene ID:
ENSAPLG00000006699
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007093
7220142 - 7270852
50711