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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7263494_7263915_F

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7263494 - 7263915
Intron Length:
422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTACGTGAT
5'SS Class:
major
3'SS Sequence:
CTTCCTTTGGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCACAA
U12 Branch Point Sequence:
TGTGCCAGGATC
Flanking Amino Acid:
ISFSCSKTHTGELMVGNGDA
Intron Amino Acid Position:
1618

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
72.9
38.5
Major BPS
59.7
0.24
1
67
29.8
Major PPT
74.6
0.55
0.9
72.7
32
Minor 5ss
33.8
-1.8
3.5
49.1
47.1
Minor BPS
46.7
-0.2
1.8
60.2
39.1

Associated Gene:

Gene:
STAB1
Ensembl Gene ID:
ENSAPLG00000006699
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007093
7220142 - 7270852
50711