About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7264131_7264991_F


Intron Information:

Intron Rank:
40

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
7264131 - 7264991

Intron Length:
861

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GAT|GTTAGGAGG

5'SS Class:
major

3'SS Sequence:
ACTTCTCTTCCAG|G

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
CTCAGAA

U12 Branch Point Sequence:
ACCCCCTCAGAA

Flanking Amino Acid:
CLLSSCQGRGMGSRKQGCER

Intron Amino Acid Position:
1689

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
64.2
0.34
1.3
58.5
45.8

Major BPS
52.6
0.07
1
50.3
35.4

Major PPT
82.5
0.73
0.8
73.6
36.3

Minor 5ss
30.5
-2.2
3
37.3
40.1

Minor BPS
43.9
-0.4
1.8
49.01
41.3

Associated Gene:

Gene:
STAB1

Ensembl Gene ID:

Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

7220142 - 7270852
50711