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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7266655_7267090_F

Intron Information:

Intron Rank:
43
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7266655 - 7267090
Intron Length:
436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGGGT
5'SS Class:
strong_major
3'SS Sequence:
ACTCTGGTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
GTTTTCTGACCT
Flanking Amino Acid:
WTGERCETRLVMTPECSPPC
Intron Amino Acid Position:
1805

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
73
38.2
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
73.3
0.53
1
69
41.3
Minor 5ss
25.5
-2.8
3.5
37.8
47.1
Minor BPS
61.8
0.45
1.8
81.31
40.1

Associated Gene:

Gene:
STAB1
Ensembl Gene ID:
ENSAPLG00000006699
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007093
7220142 - 7270852
50711