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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7267568_7268162_F

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7267568 - 7268162
Intron Length:
595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTTCATGCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CCTTCCTTCATG
Flanking Amino Acid:
EHAKCISTGPNERRCECKRG
Intron Amino Acid Position:
1906

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
77.1
33
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
75.8
0.58
0.9
69.2
36.6
Minor 5ss
31.1
-2.2
2.6
35.6
40.5
Minor BPS
59.6
0.16
1.9
62.41
46.2

Associated Gene:

Gene:
STAB1
Ensembl Gene ID:
ENSAPLG00000006699
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007093
7220142 - 7270852
50711