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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7268308_7268587_F

Intron Information:

Intron Rank:
46
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7268308 - 7268587
Intron Length:
280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTATTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
GACTTGTTATTT
Flanking Amino Acid:
EAICTDLHFHDKTMGVFHLQ
Intron Amino Acid Position:
1954

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.5
28.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
86.3
0.82
0.8
80.8
36.4
Minor 5ss
26.7
-2.7
3
27.8
37.9
Minor BPS
45.3
-0.2
2.2
60.83
43.5

Associated Gene:

Gene:
STAB1
Ensembl Gene ID:
ENSAPLG00000006699
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007093
7220142 - 7270852
50711