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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7272577_7272816_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7272577 - 7272816
Intron Length:
240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGAGC
5'SS Class:
strong_major
3'SS Sequence:
GTTGTCTCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAC
U12 Branch Point Sequence:
ACTGATGTAACC
Flanking Amino Acid:
ALTGLLERMQMYQDAESKQV
Intron Amino Acid Position:
456

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
70.2
40.3
Major BPS
65.7
0.39
1.2
67.4
36.7
Major PPT
75.8
0.58
0.9
69.7
36.7
Minor 5ss
32
-2.1
3.2
43
44.2
Minor BPS
45.2
-0.3
2.2
56.86
42.2

Associated Gene:

Gene:
NT5DC2
Ensembl Gene ID:
ENSAPLG00000006247
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006522
7272063 - 7297371
25309