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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7272958_7273642_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7272958 - 7273642
Intron Length:
685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CCCTGACCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGTTTTTTCACC
Flanking Amino Acid:
FGDHLYSDLADLMLRHGWRT
Intron Amino Acid Position:
409

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
79.7
30.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
64.8
0.33
0.9
54.7
35.5
Minor 5ss
30.1
-2.3
2.6
34
41.5
Minor BPS
63.2
0.4
1.7
74.15
36.9

Associated Gene:

Gene:
NT5DC2
Ensembl Gene ID:
ENSAPLG00000006247
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006522
7272063 - 7297371
25309