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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7279008_7283596_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7279008 - 7283596
Intron Length:
4589

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TCCTTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTTTCCCTATCC
Flanking Amino Acid:
DQVHLYKDISDAIRDVHVKG
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
76.6
33.9
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
84.9
0.79
0.6
84.6
23.3
Minor 5ss
38
-1.4
2.8
52.2
44.4
Minor BPS
66.8
0.51
1.9
83.37
36

Associated Gene:

Gene:
NT5DC2
Ensembl Gene ID:
ENSAPLG00000006247
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006522
7272063 - 7297371
25309