Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7287025_7288781_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7287025 - 7288781

Intron Length:

1757

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTCTGTCAG

5'SS Class:

major

3'SS Sequence:

GTTTTGTGTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTGAC

U12 Branch Point Sequence:

GATTACTGACAT

Flanking Amino Acid:

FHYVQLGTAYRGLKPVPDEE

Intron Amino Acid Position:

189

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.6

0.49

1.3

61.5

44.7

Major BPS

73.6

0.59

0.9

63.3

35.6

Major PPT

73.1

0.52

65.8

45.3

Minor 5ss

35.1

-1.7

2.7

40.9

45.4

Minor BPS

46.3

-0.2

65.84

43.5

Associated Gene:

Gene:

NT5DC2

Ensembl Gene ID:

ENSAPLG00000006247

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006522

7272063 - 7297371

25309