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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7288838_7290757_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7288838 - 7290757
Intron Length:
1920

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TCCATTGTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CTGATTCTAACA
Flanking Amino Acid:
IRGLHYDVQKSLLMKIDAFH
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
38.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
73.2
0.52
0.9
67.2
37.9
Minor 5ss
45.6
-0.5
2.9
65
46.2
Minor BPS
49.2
-0
1.7
59.78
40.5

Associated Gene:

Gene:
NT5DC2
Ensembl Gene ID:
ENSAPLG00000006247
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006522
7272063 - 7297371
25309