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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7291811_7297121_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7291811 - 7297121
Intron Length:
5311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGCGCC
5'SS Class:
major
3'SS Sequence:
TCCCTCCTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
GTTTCTCTAATC
Flanking Amino Acid:
RYHEMKKLVYDLLPPGVCSL
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
65.5
42
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
74.4
0.55
0.7
72.9
25.4
Minor 5ss
38.1
-1.3
3.3
52.1
44.7
Minor BPS
66
0.48
1.6
75.77
34.5

Associated Gene:

Gene:
NT5DC2
Ensembl Gene ID:
ENSAPLG00000006247
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006522
7272063 - 7297371
25309