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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7297905_7298754_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7297905 - 7298754
Intron Length:
850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTGAGTGCT
5'SS Class:
major
3'SS Sequence:
TGTTTTGCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TGCTAATAAAAT
Flanking Amino Acid:
INVRIGKETFYDVYRRKRSE
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
68.2
36.6
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
78
0.63
0.9
72.5
37.8
Minor 5ss
32.8
-2
3.3
51.5
44.9
Minor BPS
44.8
-0.3
2.1
64.39
45.1

Associated Gene:

Gene:
SMIM4
Ensembl Gene ID:
ENSAPLG00000027619
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021815
7297754 - 7298822
1069