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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7305447_7306636_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7305447 - 7306636
Intron Length:
1190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
ATAACCAAAACT
Flanking Amino Acid:
APGASPFGQQIGILGPPGQQ
Intron Amino Acid Position:
1507

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.7
83.1
30.9
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
85.6
0.8
0.9
80.6
37
Minor 5ss
30.4
-2.2
2.9
40.4
45.7
Minor BPS
50.9
0.11
2
73.5
42.6

Associated Gene:

Gene:
PBRM1
Ensembl Gene ID:
ENSAPLG00000005420
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005740
7304726 - 7360576
55851