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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7321712_7322934_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7321712 - 7322934
Intron Length:
1223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAAATG
5'SS Class:
strong_major
3'SS Sequence:
CTCTAACTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CTTCCTCTAACT
Flanking Amino Acid:
KVVDDEIYYFRKPIVPQKEP
Intron Amino Acid Position:
1293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
77.9
36.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
77.8
0.62
0.9
73.7
35.6
Minor 5ss
36.4
-1.5
3.1
48.5
47.2
Minor BPS
64.5
0.53
1.7
82.08
39.3

Associated Gene:

Gene:
PBRM1
Ensembl Gene ID:
ENSAPLG00000005420
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005740
7304726 - 7360576
55851