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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7323119_7323776_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7323119 - 7323776
Intron Length:
658

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAATCGTT
5'SS Class:
major
3'SS Sequence:
TTCATTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GCCTTCTTAACC
Flanking Amino Acid:
EETCPMTCILGKCAVLSFKD
Intron Amino Acid Position:
1232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
69
42.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
85.5
0.8
0.8
80.7
31.2
Minor 5ss
41.9
-0.9
3.5
56.3
47.9
Minor BPS
72
0.67
1.3
70.25
41.4

Associated Gene:

Gene:
PBRM1
Ensembl Gene ID:
ENSAPLG00000005420
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005740
7304726 - 7360576
55851