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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7327395_7330163_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7327395 - 7330163
Intron Length:
2769

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGAAAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
TGTTCTTGAAAA
Flanking Amino Acid:
DKLKREEEKREAEKSEDSSG
Intron Amino Acid Position:
927

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
92.8
22.7
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
63.2
0.3
1
59.8
39.6
Minor 5ss
41.7
-0.9
2.9
60.3
44.1
Minor BPS
65
0.47
1.5
74.65
36.2

Associated Gene:

Gene:
PBRM1
Ensembl Gene ID:
ENSAPLG00000005420
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005740
7304726 - 7360576
55851