About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7333445_7334197_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7333445 - 7334197
Intron Length:
753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGGCAA
5'SS Class:
major
3'SS Sequence:
TTTGTCTGCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
GTTTTTGTAATG
Flanking Amino Acid:
DDVASPKLKLSRKSGISPKK
Intron Amino Acid Position:
642

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
68.6
38
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
73.9
0.54
0.9
73.6
37
Minor 5ss
31.8
-2.1
3.3
38.6
40.8
Minor BPS
52.3
-0
2
62.87
40.1

Associated Gene:

Gene:
PBRM1
Ensembl Gene ID:
ENSAPLG00000005420
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005740
7304726 - 7360576
55851