About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7337794_7344723_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7337794 - 7344723
Intron Length:
6930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTATTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
GTTTGTTTATTT
Flanking Amino Acid:
IKTPISLQQIRMKLKNHEYE
Intron Amino Acid Position:
434

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
86.4
0.82
0.8
80.8
36.4
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
54.6
0.22
2
76.04
41.4

Associated Gene:

Gene:
PBRM1
Ensembl Gene ID:
ENSAPLG00000005420
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005740
7304726 - 7360576
55851