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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7355596_7356320_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7355596 - 7356320
Intron Length:
725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTGTG
5'SS Class:
major
3'SS Sequence:
TTTCTTGTATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGTGATTTAATT
Flanking Amino Acid:
EEGHEQGTELSSPGYLKEIL
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
71.7
38.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
77.3
0.61
0.9
78.3
34.9
Minor 5ss
38.2
-1.3
3.3
50.9
41.1
Minor BPS
62.3
0.46
1.6
77.31
39.6

Associated Gene:

Gene:
PBRM1
Ensembl Gene ID:
ENSAPLG00000005420
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005740
7304726 - 7360576
55851