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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7356456_7358965_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7356456 - 7358965
Intron Length:
2510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
ATATTGTTAATT
Flanking Amino Acid:
LFNNAKAYYKPDSPEYKAAC
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
86.2
0.81
0.8
80.6
37
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
60.7
0.41
2
78.58
38

Associated Gene:

Gene:
PBRM1
Ensembl Gene ID:
ENSAPLG00000005420
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005740
7304726 - 7360576
55851