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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7364378_7365023_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7364378 - 7365023
Intron Length:
646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAAATGC
5'SS Class:
major
3'SS Sequence:
TATTTGCCATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTTCCTTATTT
Flanking Amino Acid:
LREAEQRRQRLEELQQKQKL
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
60.2
40.1
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
73.5
0.53
1
71.7
39
Minor 5ss
37.2
-1.4
3.1
41.9
45
Minor BPS
81.5
1.07
1.4
95.91
30.5

Associated Gene:

Gene:
GNL3
Ensembl Gene ID:
ENSAPLG00000005171
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005381
7363798 - 7371674
7877