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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7368127_7368489_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7368127 - 7368489
Intron Length:
363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCTGA
5'SS Class:
major
3'SS Sequence:
TCTCTCTGAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAGAT
U12 Branch Point Sequence:
TCTCTCTGAATA
Flanking Amino Acid:
CNAGLGRGLTKCMQVVRIDK
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
68.7
39.1
Major BPS
74.1
0.6
1
69
38.9
Major PPT
68.3
0.41
0.9
65.7
34.8
Minor 5ss
44.9
-0.5
2.8
55.7
43.1
Minor BPS
61.9
0.37
1.4
69.18
37.3

Associated Gene:

Gene:
GNL3
Ensembl Gene ID:
ENSAPLG00000005171
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005381
7363798 - 7371674
7877