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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7368674_7369336_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7368674 - 7369336
Intron Length:
663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTACACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTTTTTTACA
Flanking Amino Acid:
AVLNHCSKQQVMMFYSIPDF
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
81
26.6
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
77.2
0.61
0.9
72.5
37.6
Minor 5ss
36
-1.6
2.8
44.6
43.4
Minor BPS
71.2
0.66
1.5
82.45
31.9

Associated Gene:

Gene:
GNL3
Ensembl Gene ID:
ENSAPLG00000005171
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005381
7363798 - 7371674
7877