About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7369480_7370087_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7369480 - 7370087
Intron Length:
608

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTTTTTTTAAAG
Flanking Amino Acid:
IAKLLLSDWTGAKISYHSQP
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
79.7
35.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
87.9
0.85
0.7
83.6
31.3
Minor 5ss
45
-0.5
2.5
51.2
45.5
Minor BPS
66.8
0.39
1.4
68.86
38.5

Associated Gene:

Gene:
GNL3
Ensembl Gene ID:
ENSAPLG00000005171
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005381
7363798 - 7371674
7877