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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7370225_7370957_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7370225 - 7370957
Intron Length:
733

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGACTT
5'SS Class:
strong_major
3'SS Sequence:
ATGTCTTTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
AGTGACTTAACA
Flanking Amino Acid:
LEEENNTTVQALKYPSPASS
Intron Amino Acid Position:
445

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
75.5
40.6
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
77.5
0.62
0.9
69.5
41
Minor 5ss
36.5
-1.5
3.6
56
48.1
Minor BPS
64.5
0.45
1.6
71.87
39.7

Associated Gene:

Gene:
GNL3
Ensembl Gene ID:
ENSAPLG00000005171
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005381
7363798 - 7371674
7877