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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7374937_7375120_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7374937 - 7375120
Intron Length:
184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
CCTTCCCTATCT
Flanking Amino Acid:
QLEKWMTLNVAEELYSRTLA
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.9
0.38
1.3
65.8
40.2
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
92.3
0.95
0.6
85.1
29.7
Minor 5ss
32.5
-2
2.6
33.8
33.9
Minor BPS
56.7
0.29
2
76.35
46.1

Associated Gene:

Gene:
GLT8D1
Ensembl Gene ID:
ENSAPLG00000004984
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005163
7373975 - 7376194
2220