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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7379311_7379673_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7379311 - 7379673
Intron Length:
363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGGCCG
5'SS Class:
major
3'SS Sequence:
TCTCTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAC
U12 Branch Point Sequence:
TCTCTTTTCACA
Flanking Amino Acid:
GFCRAIPTEMDYKGQKLAEQ
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
50.6
45.8
Major BPS
64.8
0.37
0.9
55.1
32.8
Major PPT
87
0.83
0.7
82.8
25.8
Minor 5ss
29.8
-2.3
3.4
35.8
42.1
Minor BPS
55.6
0.17
1.7
67.58
39.4

Associated Gene:

Gene:
SPCS1
Ensembl Gene ID:
ENSAPLG00000004976
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005124
7379275 - 7381322
2048