About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7379734_7380023_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7379734 - 7380023
Intron Length:
290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TATATTTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATATTTTTAAAG
Flanking Amino Acid:
IFQGIILVSAVIGFVYGFIT
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
81.2
32.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74.5
0.55
1.1
74.9
38.6
Minor 5ss
41.5
-0.9
2.8
57
41.2
Minor BPS
62.3
0.25
1.4
63.47
38.3

Associated Gene:

Gene:
SPCS1
Ensembl Gene ID:
ENSAPLG00000004976
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005124
7379275 - 7381322
2048