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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7393939_7394561_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7393939 - 7394561
Intron Length:
623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTAA
5'SS Class:
major
3'SS Sequence:
CTTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
AGCTCCTAAACT
Flanking Amino Acid:
LFSNKPYNCKSDVWALGCCV
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
65.4
36.8
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
96.3
1.04
0.5
95.7
14.9
Minor 5ss
34.3
-1.8
3.5
46.3
49
Minor BPS
67.4
0.63
1.7
79.07
42.9

Associated Gene:

Gene:
NEK4
Ensembl Gene ID:
ENSAPLG00000004795
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004966
7393019 - 7398463
5445