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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7394760_7395670_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7394760 - 7395670
Intron Length:
911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCCTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TTTAACTCCATC
Flanking Amino Acid:
WFVQIAMALQYLHEQHILHR
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
75.9
34.8
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
73.7
0.53
0.7
65.8
30.2
Minor 5ss
38.3
-1.3
3.1
50.9
45.7
Minor BPS
46.3
-0.3
2.1
64.51
41.1

Associated Gene:

Gene:
NEK4
Ensembl Gene ID:
ENSAPLG00000004795
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004966
7393019 - 7398463
5445