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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7395938_7398370_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7395938 - 7398370
Intron Length:
2433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCGAGG
5'SS Class:
major
3'SS Sequence:
ATTTCTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
ATTTCTTTTACA
Flanking Amino Acid:
LVRHRHDSKQYVIKKLNLKN
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65
0.36
1.3
55.2
49
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
89.6
0.89
0.7
84.2
30
Minor 5ss
35.8
-1.6
3.4
48.3
47.5
Minor BPS
73
0.72
1.5
81.53
33.1

Associated Gene:

Gene:
NEK4
Ensembl Gene ID:
ENSAPLG00000004795
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004966
7393019 - 7398463
5445