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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7411616_7412020_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7411616 - 7412020
Intron Length:
405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TTATTTCCAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
GTTTCCTTATTT
Flanking Amino Acid:
SLTVDVKGEGANDVLSFTTQ
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
74.7
41.5
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
74.1
0.54
0.9
71.2
34.4
Minor 5ss
41.3
-1
2.8
52.3
44.3
Minor BPS
75.7
0.88
1.5
88.81
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004256
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004404
7410062 - 7421003
10942