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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7412161_7412201_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
7412161 - 7412201
Intron Length:
41

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAATTAAA
5'SS Class:
major
3'SS Sequence:
TGAAACTATTAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
AAATCTAGAACT
Flanking Amino Acid:
YLTIEQLLEKRHVTKEKENL
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
76.4
34.2
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
52.4
0.06
1.2
54
44.7
Minor 5ss
35.6
-1.6
2.7
43.2
43.9
Minor BPS
52.8
0.17
1.7
70.96
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004256
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004404
7410062 - 7421003
10942